Protein ZmLBD42
ZmLBD42 is a protein in the LBD family.
Information
TF Name: ZmLBD42
Species: Maize
TF Family: LBD
Gene Name(Synonym): LBD42
Uniprot ID: B4FGE2
Subgenome: 2

Protein ZmLBD42

ZmLBD42 is a protein in the LBD family.

Overview of domains present in v5 transcripts
PF03195
Zm00001eb398670_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d047921DAPseq no logo sequence fimo position
Zm00001d047921DAPseq no logo sequence fimo position
Zm00001d047921ChIPseq no logo sequence fimo position
Zm00001d047921PChIPseq no logo sequence fimo position

Interactions where ZmLBD42 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmLBD42 is the target  
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There are 102 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb398670_T001 from maize genome v5

Amino Acid Sequence
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MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF03195
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Nucleotide Sequence
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CTCCCCTCTCTCGCTCCCTCTCTCT...

GRMZM2G150594_T01 from maize genome v3


Related TFome: pUT6767

Amino Acid Sequence
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MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

Nucleotide Sequence
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CTCCCCTCTCTCGCTCCCTCTCTCT...

GRMZM2G150594_T02 from maize genome v3

Amino Acid Sequence
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MNNVTYVRPLDPQVVNLQAELTYLQAHLATLELPSPPPLPAPPQMPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAV
HQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQSLARELLDRHRSGGVKLEPPPPHSR

Nucleotide Sequence
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CAATTTACTGTTGGTGCATGAATAA...

Zm00001d047921_T001 from maize genome v4

Amino Acid Sequence
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MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR

Nucleotide Sequence
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TGCCTTCCCTTCCCCAGTTGCCCTC...


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