Protein ZmLBD42 | |
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Information | |
TF Name: | ZmLBD42 |
Species: | Maize |
TF Family: | LBD |
Gene Name(Synonym): | LBD42 |
Uniprot ID: | B4FGE2 |
Subgenome: | 2 |
ZmLBD42 is a protein in the LBD family.
Overview of domains present in v5 transcripts | |
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PF03195 | |
Zm00001eb398670_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d047921 | DAPseq | sequence | fimo | position | |
Zm00001d047921 | DAPseq | sequence | fimo | position | |
Zm00001d047921 | ChIPseq | sequence | fimo | position | |
Zm00001d047921 | PChIPseq | sequence | fimo | position |
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF03195 |
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Hover here to show all domains |
CTCCCCTCTCTCGCTCCCTCTCTCT...
CTCCCCTCTCTCGCTCCCTCTCTCTCTGCCTTGCCTTCCCTTCCCCAGTTGCCCTCGCCATTGTTTATCCCGGCCTATAACTAGTATAAGCCCAACCCCCGGCCACTGGACCACAGCAGGGTCGCAGTGCCACGGAGGGAAAAGGATCGAGATAGATAAAAAAGGTAGTCGTCCGTCCTCCAGGGCAGCTAGCGCCGGCGCACCTGAGGGGCAATGAGCGCTGGAGGCGGCGCCGGCGCCAGCACGCTCGGCGGTGGGGGCCCGAGCGGCAGCGGCAGCGGCAGCGGAGGCTCTGGAGCTGGAGTAATCGGCGGCGGCGGCGGCGGCGGCGCCGGCGGGCCCTGCGGCGCGTGCAAGTTCCTCCGGCGCAAGTGCGTCAGCGGCTGCATCTTCGCGCCCTACTTCGACTCGGAGCAGGGCGCGGCGCACTTCGCGGCCGTGCACAAGGTGTTCGGCGCCAGCAACGTGTCCAAGCTGCTGCTCCAGATCCCGCCGCACAAGCGCCTCGACGCCGTCGTCACCATCTGCTACGAGGCCCAGGCGCGGCTCCGTGACCCCGTCTACGGCTGCGTCGCACACATCTTCGCGCTCCAGCAGCAGGTGGTGAATCTCCAGGCCGAGCTGACCTACCTGCAAGCGCACCTCGCGACGCTGGAGCTGCCGTCCCCGCCTCCGCTGCCGGCCCCGCCGCAGATGCCGATGCCAGGCCCGTTCTCCATCGCCGACCTTCCGTCGTCGACCAGCGTCCCCACCACCGTCGACCTGTCCACGCTCTTCGACCCGCCGCCGCAGTGGGCGGTCCACCAGCCGCACCACCACCACCAACAGCTGCAGCAGCACCAGCTCCGGCAACCGGCGCCGTATGGCGCGCCCGTCAGGCCGGGCGGCGGCATGGCCGCAGAGAGCTCAGGCGGCGGCAGCGGGGACCTGCAGTCGCTGGCGAGGGAGCTCCTGGACCGCCACCGCTCAGGCGGCGTCAAGCTCGAGCCGCCGCCGCCGCACTCGAGATGAGCTGGATGAAGGGTGGTAGAACGATCAAACACCGTGGATCGGAGAACGAGGTGAGGGAGTTTGGCGCGCGCGCGGCAGTGGCGAGGGAGATAGGGGTCGGTGACGGGCGATGGCCAGCAGGAGTAGCCGAGTAGGTAAGCAGCATTGGCCGGGTTTTCGCGTATCCATCTTGTTGTTAACCAGCTGGGGTGCAATGGCGCCCCACCACTTTCATATATGCTCCAGTTTGATTATATTTTCTCCATGACAAAACAAGAGTGCTAGCTGGGGCATCGAGAGTAGTACTAGAATTGACATGTATTAGTAACATTATTACCTTTGTCACCGTTCCATTAATTGCAAGATTTTTATTAAGAG
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
CTCCCCTCTCTCGCTCCCTCTCTCT...
CTCCCCTCTCTCGCTCCCTCTCTCTCTGCCTTGCCTTCCCTTCCCCAGTTGCCCTCGCCATTGTTTATCCCGGCCTATAACTAGTATAAGCCCAACCCCCGGCCACTGGACCACAGCAGGGTCGCAGTGCCACGGAGGGAAAAGGATCGAGATAGATAAAAAAGGTAGTCGTCCGTCCTCCAGGGCAGCTAGCGCCGGCGCACCTGAGGGGCAATGAGCGCTGGAGGCGGCGCCGGCGCCAGCACGCTCGGCGGTGGGGGCCCGAGCGGCAGCGGCAGCGGCAGCGGAGGCTCTGGAGCTGGAGTAATCGGCGGCGGCGGCGGCGGCGGCGCCGGCGGGCCCTGCGGCGCGTGCAAGTTCCTCCGGCGCAAGTGCGTCAGCGGCTGCATCTTCGCGCCCTACTTCGACTCGGAGCAGGGCGCGGCGCACTTCGCGGCCGTGCACAAGGTGTTCGGCGCCAGCAACGTGTCCAAGCTGCTGCTCCAGATCCCGCCGCACAAGCGCCTCGACGCCGTCGTCACCATCTGCTACGAGGCCCAGGCGCGGCTCCGTGACCCCGTCTACGGCTGCGTCGCACACATCTTCGCGCTCCAGCAGCAGGTGGTGAATCTCCAGGCCGAGCTGACCTACCTGCAAGCGCACCTCGCGACGCTGGAGCTGCCGTCCCCGCCTCCGCTGCCGGCCCCGCCGCAGATGCCGATGCCAGGCCCGTTCTCCATCGCCGACCTTCCGTCGTCGACCAGCGTCCCCACCACCGTCGACCTGTCCACGCTCTTCGACCCGCCGCCGCAGTGGGCGGTCCACCAGCCGCACCACCACCACCAACAGCTGCAGCAGCACCAGCTCCGGCAACCGGCGCCGTATGGCGCGCCCGTCAGGCCGGGCGGCGGCATGGCCGCAGAGAGCTCAGGCGGCGGCAGCGGGGACCTGCAGTCGCTGGCGAGGGAGCTCCTGGACCGCCACCGCTCAGGCGGCGTCAAGCTCGAGCCGCCGCCGCCGCACTCGAGATGAGCTGGATGAAGGGTGGTAGAACGATCAAACACCGTGGATCGGAGAACGAGGTGAGGGAGTTTGGCGCGCGCGCGGCAGTGGCGAGGGAGATAGGGGTCGGTGACGGGCGATGGCCAGCAGGAGTAGCCGAGTAGGTAAGCAGCATTGGCCGGGTTTTCGCGTATCCATCTTGTTGTTAACCAGCTGGGGTGCAATGGCGCCCCACCACTTTCATATATGCTCCAGTTTGATTATATTTTCTCCATGACAAAACAAGAGTGCTAGCTGGGGCATCGAGAGTAGTACTAGAATTGACATGTATTAGTAACATTATTACCTTTGTCACCGTTCCATTAATTGCAAGATTTTTATTAAGAG
MNNVTYVRPLDPQVVNLQAELTYLQAHLATLELPSPPPLPAPPQMPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAV
HQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQSLARELLDRHRSGGVKLEPPPPHSR
CAATTTACTGTTGGTGCATGAATAA...
CAATTTACTGTTGGTGCATGAATAATGTCACGTACGTCCGGCCTTTGGATCCCCAGGTGGTGAATCTCCAGGCCGAGCTGACCTACCTGCAAGCGCACCTCGCGACGCTGGAGCTGCCGTCCCCGCCTCCGCTGCCGGCCCCGCCGCAGATGCCGATGCCAGGCCCGTTCTCCATCGCCGACCTTCCGTCGTCGACCAGCGTCCCCACCACCGTCGACCTGTCCACGCTCTTCGACCCGCCGCCGCAGTGGGCGGTCCACCAGCCGCACCACCACCACCAACAGCTGCAGCAGCACCAGCTCCGGCAACCGGCGCCGTATGGCGCGCCCGTCAGGCCGGGCGGCGGCATGGCCGCAGAGAGCTCAGGCGGCGGCAGCGGGGACCTGCAGTCGCTGGCGAGGGAGCTCCTGGACCGCCACCGCTCAGGCGGCGTCAAGCTCGAGCCGCCGCCGCCGCACTCGAGATGAGCTGGATGAAGGGTGGTAGAACGATCAAACACCGTGGATCGGAGAACGAGGTGAGGGAGTTTGGCGCGCGCGCGGCAGTGGCGAGGGAGATAGGGGTCGGTGACGGGCGATGGCCAGCAGGAGTAGCCGAGTAGGTAAGCAGCATTGGCCGGGTTTTCGCGTATCCATCTTGTTGTTAACCAGCTGGGGTGCAATGGCGCCCCACCACTTTCATATATGCTCCAGTTTGATTATATTTTCTCCATGACAAAACAAGAGTGCTAGCTGGGGCATCGAGAGTAGTACTAGAATTGACATGTATTAGTAACATTATTACCTTTGTCACCGTTCCATTAATTGCAAGATTTTTATTAAGAG
MSAGGGAGASTLGGGGPSGSGSGSGGSGAGVIGGGGGGGAGGPCGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVF
GASNVSKLLLQIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLATLELPSPPPLPAPPQ
MPMPGPFSIADLPSSTSVPTTVDLSTLFDPPPQWAVHQPHHHHQQLQQHQLRQPAPYGAPVRPGGGMAAESSGGGSGDLQ
SLARELLDRHRSGGVKLEPPPPHSR
TGCCTTCCCTTCCCCAGTTGCCCTC...
TGCCTTCCCTTCCCCAGTTGCCCTCGCCATTGTTTATCCCGGCCTATAACTAGTATAAGCCCAACCCCCGGCCACTGGACCACAGCAGGGTCGCAGTGCCACGGAGGGAAAAGGATCGAGATAGATAAAAAAGGTAGTCGTCCGTCCTCCAGGGCAGCTAGCGCCGGCGCACCTGAGGGGCAATGAGCGCTGGAGGCGGCGCCGGCGCCAGCACGCTCGGCGGTGGGGGCCCGAGCGGCAGCGGCAGCGGCAGCGGAGGCTCTGGAGCTGGAGTAATCGGCGGCGGCGGCGGCGGCGGCGCCGGCGGGCCCTGCGGCGCGTGCAAGTTCCTCCGGCGCAAGTGCGTCAGCGGCTGCATCTTCGCGCCCTACTTCGACTCGGAGCAGGGCGCGGCGCACTTCGCGGCCGTGCACAAGGTGTTCGGCGCCAGCAACGTGTCCAAGCTGCTGCTCCAGATCCCGCCGCACAAGCGCCTCGACGCCGTCGTCACCATCTGCTACGAGGCCCAGGCGCGGCTCCGTGACCCCGTCTACGGCTGCGTCGCACACATCTTCGCGCTCCAGCAGCAGGTGGTGAATCTCCAGGCCGAGCTGACCTACCTGCAAGCGCACCTCGCGACGCTGGAGCTGCCGTCCCCGCCTCCGCTGCCGGCCCCGCCGCAGATGCCGATGCCAGGCCCGTTCTCCATCGCCGACCTTCCGTCGTCGACCAGCGTCCCCACCACCGTCGACCTGTCCACGCTCTTCGACCCGCCGCCGCAGTGGGCGGTCCACCAGCCGCACCACCACCACCAACAGCTGCAGCAGCACCAGCTCCGGCAACCGGCGCCGTATGGCGCGCCCGTCAGGCCGGGCGGCGGCATGGCCGCAGAGAGCTCAGGCGGCGGCAGCGGGGACCTGCAGTCGCTGGCGAGGGAGCTCCTGGACCGCCACCGCTCAGGCGGCGTCAAGCTCGAGCCGCCGCCGCCGCACTCGAGATGAGCTGGATGAAGGGTGGTAGAACGATCAAACACCGTGGATCGGAGAACGAGGTGAGGGAGTTTGGCGCGCGCGCGGCAGTGGCGAGGGAGATAGGGGTCGGTGACGGGCGATGGCCAGCAGGAGTAGCCGAGTAGGTAAGCAGCATTGGCCGGGTTTTCGCGTATCCATCTTGTTGTTAACCAGCTGGGGTGCAATGGCGCCCCACCACTTTCATATATGCTCCAGTTTGATTATATTTTCTCCATGACAAAACAAGAGTGCTAGCTGGGGCATCGAGAGTAGTACTAGAATTGACATGTATTAGTAACATTATTACCTTTGTCACCGTTCCATTAATTGCAAGATTTTTATTAAGAG
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